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Publication
- Yongtao Guan and Daniel Levy (2024), Estimation of inbreeding and kinship coefficients via latent identity-by-descent states Bioinformatics, 40(2) btae082
- Hang Dai and Yongtao Guan (2020), The Nubeam reference-free approach to analyze metagenomic sequencing reads Genome Research, 30(9) 1364-1375
- Hang Dai and Yongtao Guan (2020), Nubeam-dedup: a fast and RAM-efficient tool to de-duplicate sequencing reads without mapping Bioinformatics, 36(10),3254-3256
- Minghao Dang, Hanli Xu, Jingbo Zhang, Weiwei Wang, Ling Bai, Nan Fang, Lin Liang, Junrong Zhang, Feiran Liu, Qixi Wu, Shaowei Wang, Yongtao Guan (2020), Inferring fetal fractions from read heterozygosity empowers the noninvasive prenatal screening Genetics in Medicine, 22(2) 301-308
- Quan Zhou and Yongtao Guan (2019), Fast Model-Fitting of Bayesian Variable Selection Regression Using the Iterative Complex Factorization Algorithm Bayesian Anal., 14(2),573-594
- Hanli Xu, Shaowei Wang, Lin-Lin Ma, Shuai Huang, Lin Liang, Qian Liu, Yang-Yang Liu, Ke-Di Liu, Ze-Min Tan, Hao Ban, Yongtao Guan, and Zuhong Lu (2018), Informative Priors on Fetal Fraction Increase Power of the Noninvasive Prenatal Screen. Genetics in Medicine, 20(8):817-824
- Quan Zhou and Yongtao Guan (2018), On the Null Distribution of Bayes Factors in Linear Regression. Journal of American Statistical Association, 113(523):1362–71.
- Quan Zhou, Liang Zhao and Yongtao Guan (2016), Strong Selection at MHC in Mexicans since Admixture. PLoS Genetics, 12(2):e1005847.
- Hanli Xu and Yongtao Guan (2014), Detecting Local Haplotype Sharing and Haplotype Association. Genetics 197(3):823--838.
- Yongtao Guan (2014), Detecting structure of haplotypes and local ancestry. Genetics, 196(3):625--642.
- Yongtao Guan and Matthew Stephens (2011), Bayesian Variable Selection Regression for Genome-wide Association Studies, and other Large-Scale Problems. Annals of Applied Statistics 5(3) 1780-1815.
- Yongtao Guan and Matthew Stephens (2008), Practical Issues in Imputation Based Association Mapping. PLoS Genetics, 4(12): e1000279.
- Yongtao Guan and Steve Krone (2007), Small--world MCMC and Convergence to Multi-modal Distributions: From Slow Mixing to Fast Mixing. Annals of Applied Probability, 17, 284--304.
- Yongtao Guan, Roland Fleissner, Paul Joyce and Steve Krone (2006), Markov Chain Monte Carlo in Small Worlds. Journal of Statistics and Computing, 16, 193--202.
- Steve Krone and Yongtao Guan (2006), Spatial Self-Organization in a Cyclic Resource-Species Model. Journal of Theoretical Biology, 241, 14--25.