Menu:
Software
- Bach: Bausch's algorithm for chi-squared weighted sum
- This software computes tail probability of a mixture of chi-squared random variables. We (I mean former graduate stuent Quan Zhou) implmented Bausch's algorithm using GNU GMP library so that a tail probability (or p-value) can be evaluated to an arbitrary precision. It is the companion software for a manuscript written by Zhou and Guan Null distribution of Bayes factors.
- Download and Documentation
- BIMBAM: Baysian Imputation Based Association Mapping
- ELAI: Efficient Local Ancestry Inference
- hapQTL: haplotype Quantitative Loci
- IDUL: Iterative dispersion udpate to fit linear mixed model
- Kindred: Infer kinship and inbreeding coefficients
- Nubeam-dedup de-duplicate sequencing reads without mapping
- Nubeam-dedup represents nucleotides by matrices, transforms reads into products of matrices, and based on which assigns a unique number to a read. Thus, duplicate reads can be efficiently removed by using a collisionless hash function. This is the companion software for the paper Nubeam-dedup Bioinforamtics.
- Download and Documentation on github
- piMASS: posterior inference via Model Averaging and Subset Selection
- WinSSS: Windows-based Stochastic Spatial Simulator
- This is a Windows-based software. It implements many classical models in interacting particle systems, for example, the multiple contact process, the Greenberg Hastings process, and the generalized Rock-Scissor-Paper dynamic. The real time animations are rendered by openGL.
- Download and Documentation
- Source code for WinSSS